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Genetic resources for microorganisms of current and potential use in aquaculture









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    Genetic resources for microorganisms of current and potential use in aquaculture
    Thematic background study
    2021
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    Aquaculture is the farming of aquatic organisms ranging from microbes to shellfish and finfish. Fisheries production from the capture of wild fish has remained fairly constant since the late 1980s and it is the increase in production from aquaculture that has led to substantial growth in fish production for human consumption, with aquaculture contributing more than wildcaught fisheries for the first time in 2014 and this trend is likely to continue. Global aquaculture production accounted for 44.1 percent of total global fish production, including production for non-food uses, in 2014. The share of fish produced by aquaculture for human consumption increased from 26 percent in 1994 to about 50 percent in 2014, with 73.8 million tonnes of fish valued at USD 160 billion being harvested from aquaculture in 2014. In facing the challenge of providing food to a growing human population predicted to reach 9.7 billion by 2050, fish consumption, especially produced from aquaculture, has an important role to play. The Second International Conference on Nutrition (ICN2) held in 2014 adopted the Rome Declaration on Nutrition that highlighted the key role of fish in meeting the nutritional needs of this growing population. Global per capita fish consumption has increased from under 10 kg in the 1960s to approach 20 kg in 2014 and 2015 and now provides over 3.1 billion people with approaching 20 percent of their animal protein intake, enhancing people’s diets around the world. Microbes play a critically important role in the cycling of nutrients in terrestrial and aquatic ecosystems globally. Marine microbes are responsible for approximately half of global primary production and play a huge role in the cycling of carbon, nitrogen, phosphorus and other nutrients. Microbes have a central role in sustaining life on earth and lie at the centre of such as sustainability and climate change. Microbes also have a direct, central and critically important role in fisheries and aquaculture. Microbes in natural marine and freshwater ecosystems are key components of food webs, primary and secondary production and nutrient cycling. A wide range of microbes are used directly in aquaculture as live feeds, probiotics, and in filtration systems. Aquatic microorganisms are therefore indispensable resources for growth of shellfish and finfish in natural aquatic ecosystems and in aquaculture.
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    Incorporating genetic diversity and indicators into statistics and monitoring of farmed aquatic species and their wild relatives 2017
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    The FAO Commission on Genetic Resources for Food and Agriculture, realizing that substantial production from aquaculture and capture fisheries is based on groups below the level of the species and that genetic information has a variety of uses in fishery management, requested FAO to undertake a thematic study to explore incorporating genetic diversity and indicators into statistics and monitoring of farmed aquatic species and their wild relatives. Information about aquatic genetic resources can be extremely useful to resource managers, policy-makers, private industry and the general public. Not only is genetic diversity the basic building block for selective breeding programmes in aquaculture and for natural populations to adapt to changing environments and evolve, but information on genetic diversity can also be used, inter alia, to help meet production and consumer demands, to prevent and diagnose disease, to trace fish and fish products in the production chain, to monitor impacts of alien species on native species, to differentiate cryptic species, to manage broodstock, and to design more effective conservation and species recovery programmes. However, the majority of resource managers and those government officials submitting information to FAO do not use or have sufficient access to information on aquatic genetic diversity of farmed species and their wild relatives.
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    Genome-based Biotechnologies in Aquaculture 2017
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    Genome technologies have been developed to study genome structure, organization, expression and function, and to select and modify genomes of interest to increase benefits to humans. Of these genome technologies, DNA marker technologies have been intensely used to map the genome to understand genome structure and organization. These DNA marker technologies include restriction fragment length polymorphism markers; mitochondrial DNA markers; DNA barcoding; random amplified polymorphic DNA markers; amplified fragment length polymorphism markers; microsatellite markers; single nucleotide polymorphism (SNP) markers; and restriction site-associated DNA sequencing markers (SNP markers per se). Although these marker systems have been used at various levels for various purposes, the microsatellite markers and SNP markers are currently the most important. Various genome mapping technologies have been developed, including both genetic mapping and physical mapping methods. Genetic mapping is based on recombination during meiosis, while physical mapping is based on fingerprints of DNA segments. Although several variations of physical mapping methods are available, such as radiation hybrid mapping and optical mapping, the most popular physical mapping method is the bacterial artificial chromosome based fingerprinting.

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