Previous Page Table of Contents Next Page


9. LITERATURE CITED

ADKISON, M.D. and R.M. PETERMAN. 1996. Results of Bayesian methods depend on details of implementation: An example of estimating salmon escapement goals. Fish. Res. 25, 155-170.

ANGEL, J.R., BURKE, D.L., O'BOYLE, R.N., PEACOCK, F.G., SINCLAIR, M. and K.C.T. ZWANENBURG. 1994. Standardization of nomenclature for animal health risk analysis. Rev. Sci. Tech. O.I.E. 12, 1045-1053.

ANNALA, J.H. (1993). Fishery assessment approaches in New Zealand's ITQ system. pp. 791-805. In: Kruse, G., Eggers, D.M., Marasco, R.J., Pautzke, C. and T.J. Quinn. II. eds. Proceedings of the International Symposium on Management Strategies for Exploited Fish Populations, Alaska Sea Grant Coll. Program Rep. No 93-02, University of Alaska, Fairbanks.

BEDDINGTON, J.R. and J.G. COOKE. 1983. The potential yield of fish stocks. FAO Fish. Tech. Pap. 242.

BERGH, M.O. and D.S. BUTTERWORTH. 1987. Towards rational harvesting of the South African anchovy considering survey imprecision and recruitment variability. S. Afr. J. mar. Sci. 5, 937-951.

BOX, G.E.P. and G.C. TIAO. 1973. Bayesian Inference in Statistical Analysis. New York: Wiley.

BURGNER, R.L. 1991. Life history of sockeye salmon (Oncorhynchus nerka). pp. 1-118. In: Groot, C. and L. Margolis. eds. Pacific salmon life histories, Vancouver: University of British Columbia Press.

BUTTERWORTH, D.S. 1995. On reservations concerning the results of the Bayesian synthesis analysis, given the approach used to develop prior distributions for natural mortality rates. Rep. int. Whal. Commn 45, 163-164.

BUTTERWORTH, D.S. and M.O. BERGH. 1993. The development of a management procedure for the South African anchovy resource. pp. 83-99. In: Smith, S.J., Hunt, J.J. and D. Rivard. eds. Risk Evaluation and Biological Reference Points for Fisheries Management. Can. Spec. Publ. Fish. Aquat. Sci. 120.

BUTTERWORTH, D.S. and P.B. BEST. 1994. The origins of the choice of 54% of carrying capacity as the protection level for baleen whale stocks, and the implications thereof for management procedures. Rep. int. Whal. Commn 44, 491-497.

BUTTERWORTH, D.S. and A.E. PUNT. 1995. On the Bayesian approach suggested for the assessment of the Bering-Chukchi-Beaufort Seas stock of bowhead whales. Rep. int. Whal. Commn 45, 303-311.

BUTTERWORTH, D., COCHRANE, K. and J. DE OLIVEIRA. 1997. Management procedures: A better way to manage fisheries? The South African experience. pp. 83-90. In: Pikitch, E.K., Huppert, D.D. and M.P. Sissenwine. eds. Global Trends: Fisheries Management. Bethesda: American Fisheries Society Symposium.

BUTTERWORTH, D.S., PUNT, A.E. and A.D.M. SMITH. 1996. On plausible hypotheses and their weightings, with implications for selection between variants of the Revised Management Procedure. Rep. int. Whal. Commn 46, 637-640.

CLARK, W.G., HARE, S.R., PARMA, A.M., SULLIVAN, P.J. and R.J. TRUMBLE. 1999. Decadal changes in growth and recruitment of Pacific halibut (Hippoglossus stenolepis). Can. J. Fish. Aquat. Sci. 56, 242-252.

COCHRANE, K.L., BUTTERWORTH, D.S., DE OLIVEIRA, J.A.A. and B.A. ROEL. 1998. Management procedures in a fishery based on highly variable stocks and with conflicting objectives: experiences in the South African pelagic fishery. Rev. Fish. Biol. Fish. 8, 177-214.

COLLIE, J.S. and C.J. WALTERS. 1991. Adaptive management of spatially replicated groundfish populations. Can. J. Fish. Aquat. Sci. 48, 1273-1284.

COWLES, M.K and B.P. CARLIN. 1996. Markov Chain Monte Carlo convergence diagnostics: A comparative review. J. Am. Statist. Assoc. 91, 883-904.

DERISO, R.B. 1980. Harvesting strategies and parameter estimation for an age-structured model. Can. J. Fish. Aquat. Sci. 37, 268-282.

DERISO, R.B., QUINN, T.J. II and P.R. NEAL. 1985. Catch-age analysis with auxiliary information. Can. J. Fish. Aquat. Sci. 42, 815-824.

DONOVAN, G.P. 1989. The Comprehensive Assessment of Whale Stocks: The Early Years. Rep. int. Whal. Commn (Special Issue 11).

DUNN, A., HARLEY, S.J., DOONAN, I.J. and B. BULL. 2000. Calculation and interpretation of catch-per-unit-effort (CPUE) indices. New Zealand Fisheries Assessment Research Document 2000/1.

FOURNIER, D. and C.P. ARCHIBALD. 1982. A general theory for analyzing catch at age data. Can. J. Fish. Aquat. Sci. 39, 1195-1207.

FOURNIER, D.A., SIBERT, J.R., MAJKOWSKI, J. and J. HAMPTON. 1990. MULTIFAN a likelihood-based method for estimating growth parameters and age composition from multiple length frequency data sets illustrated using data for southern bluefin tuna (Thunnus maccoyii). Can. J. Fish. Aquat. Sci. 47, 301-317.

FRANCIS, R.I.C.C. 1992. Use of risk analysis to assess fishery management strategies: a case study using orange roughy (Hoplostethus atlanticus) on the Chatham Rise, New Zealand. Can. J. Fish. Aquat. Sci. 49, 922-930.

FRANCIS, R.I.C.C. and R. SHOTTON. 1997. "Risk" in fisheries management: a review. Can. J. Fish. Aquat. Sci. 54, 1699-1715.

FROESE, R. and D. PAULY. 1997. FishBase 97: Design and Data Sources. Manila: International Center for Living Marine Aquatic Resources Management.

GAVARIS, S. 1988. An adaptive framework for the estimation of population size. Can. Alt. Fish. Sci. Ad. Comm. Res. Doc. 88/29.

GAYANILO, F.C. Jr., SPARRE, P. and D. PAULY. 1996. FAO-ICLARM stock assessment tools. User's Manual. FAO Computerised Information Series (Fisheries). Rome: FAO.

GAYANILO, F.C. Jr. and D. PAULY. 1997. FAO-ICLARM stock assessment tools. Reference Manual. FAO Computerised Information Series (Fisheries). Rome: FAO.

GELMAN, A. and D.B. RUBIN. 1992. Inference from iterative simulation using multiplicative sequences. Statistical Science 7, 457-472.

GELMAN, A., CARLIN, B.P., STERN, H.S. and D.B. RUBIN. 1995. Bayesian Data Analysis. London: Chapman and Hall.

GEWEKE, J. 1992. Evaluating the accuracy of sampling-based approaches to the calculation of posterior moments. pp. 169-193. In: Bernardo, J.M., Berger, J., Dawid, A.P. and A.F.M. Smith eds. Bayesian Statistics 4. Oxford: Oxford University Press.

GILCHRIST, W. 1984. Statistical Modelling. New York: Wiley.

GIVENS, G.H., RAFTERY, A.E. and J.E. ZEH. 1994. A reweighting approach for sensitivity analysis within the Bayesian synthesis framework for population assessment modeling. Rep. int. Whal. Commn 44, 377-384.

GUNDERSON, D.R. and P.H. DYGERT. 1988. Reproductive effort as a predictor of natural mortality. J. Cons. Int. Explor. Mer. 44, 200-209.

HALL, D.L., HILBORN, R., STOCKER, M. and C.J. WALTERS. 1988. Alternative harvest strategies for Pacific herring (Clupea harengus pallasi). Can. J. Fish. Aquat. Sci. 45, 888-897.

HASTINGS, W.K. 1970. Monte Carlo sampling methods using Markov chains and their applications. Biometrika 57, 97-109.

HILBORN, R. 1990a. Determination of fish movement patterns from tag recoveries using maximum likelihood estimators. Can. J. Fish. Aquat. Sci. 47, 635-643.

HILBORN, R. 1990b. Estimating the parameters of full age-structured models from catch and abundance data. Bull. int. North Pac. Fish. Commn 50, 207-213.

HILBORN, R. and W. LUEDKE. 1987. Rationalizing the irrational: a case study in user group participation in Pacific salmon management. Can. J. Fish. Aquat. Sci. 44, 1796-1805.

HILBORN, R. and M. LIERMANN. 1998. Standing on the shoulders of giants: learning from experience in fisheries. Rev. Fish. Biol. Fish. 8, 273-283.

HILBORN, R. and M. MANGEL. 1997. The Ecological Detective: Confronting models with data. Princeton: Princeton University Press.

HILBORN, R. and C.J. WALTERS. 1992. Quantitative Fisheries Stock Assessment: Choice, Dynamics and Uncertainty. London: Chapman and Hall.

HILBORN, R., PIKITCH, E.K. and M.K. MCALLISTER. 1994. A Bayesian estimation and decision analysis for an age-structured model using biomass survey data. Fish. Res. 19, 17-30.

HILBORN, R., MAUNDER, M., PARMA, A., ERNST, B., PAYNE, J. AND P.J. STARR. 2000. Documentation for a general age-structured Bayesian stock assessment model: code named Coleraine. Fisheries Research Institute, University of Washington, FRI/UW 00/01.

INTERNATIONAL WHALING COMMISSION 1995. Report of the Scientific Committee, Annex F. Report of the Sub-Committee on Aboriginal Subsistence Whaling. Rep. int. Whal. Commn 45, 142-164.

KASS, R.E. and L. WASSERMAN. 1996. The selection of prior distributions by formal rules. J. Am. Stat. Assoc. 91, 1343-1370.

KINAS, P.G. 1996. Bayesian fishery stock assessment and decision making using adaptive importance sampling. Can. J. Fish. Aquat. Sci. 53, 414-423.

LIERMANN, M. and R. HILBORN. 1997. Depensation in fish stocks: A hierarchic Bayesian meta-analysis. Can. J. Fish. Aquat. Sci. 54, 1976-1983.

LINDLEY, D.V. 1983. Theory and practice of Bayesian statistics. The Statistician 32, 1-11.

MCALLISTER, M.K. 1995. Using decision analysis to choose a design for surveying fisheries resources. Ph.D. thesis, University of Washington, Seattle.

MCALLISTER, M.K. and J.N. IANELLI. 1997. Bayesian stock assessment using catch-age data and the sampling-importance resampling algorithm. Can. J. Fish. Aquat. Sci. 54, 284-300.

MCALLISTER, M.K. and G.P. KIRKWOOD. 1998a. Bayesian stock assessment: a review and example application using the logistic model. ICES. J. Mar. Sci. 55, 1031-1060.

MCALLISTER, M.K. and G.P. KIRKWOOD. 1998b. Using Bayesian decision analysis to help achieve a precautionary approach for managing developing fisheries. Can. J. Fish. Aquat. Sci. 55, 2642-2661.

MCALLISTER, M.K., STARR, P.J., RESTREPO, V.R. and G.P. KIRKWOOD. 1999. Formulating quantitative methods to evaluate fishery-management systems: what fishery processes should be modelled and what trade-offs should be made? ICES. J. Mar. Sci. 56, 900-916.

MCALLISTER, M.K., PIKITCH, E.K., PUNT, A.E. and R. HILBORN. 1994. A Bayesian approach to stock assessment and harvest decisions using the sampling/importance resampling algorithm. Can. J. Fish. Aquat. Sci. 51, 2673-2687.

MEYER, R. and R.B. MILLAR. 1999a. Bayesian stock assessment using a state-space implementation of the delay difference model. Can. J. Fish. Aquat. Sci. 56, 37-52.

MEYER, R. and R.B. MILLAR. 1999b. BUGS in Bayesian stock assessment. Can. J. Fish. Aquat. Sci. 56, 1078-1086.

MYERS, R.A., BRIDSON, J. and N.J. BARROWMAN. 1995. Summary of worldwide spawner and recruitment data. Can. Tech. Rep. Fish. Aquat. Sci. 2024.

MYERS, R.A., BOWEN, K.G. and N.J. BARROWMAN. 1999a. Maximum reproductive rate of fish at low population sizes. Can. J. Fish. Aquat. Sci. 56, 2404-2419.

MYERS, R.A., MACKENZIE, B.R. and K.G. BOWEN. 1999b. Empirical models of carrying capacity, maximum reproductive rate, and species interactions using a meta-analytic approach. ICES CM 99/Y18.

OH, M.S. and J.O. BERGER. 1992. Adaptive importance sampling in Monte Carlo integration. J. Stat. Comput. Simul. 41, 143-168.

PATTERSON, K.R. 1999. Evaluating uncertainty in harvest control law catches using Bayesian Markov chain Monte Carlo virtual population analysis with adaptive rejection sampling and including structural uncertainty. Can. J. Fish. Aquat. Sci. 56, 208-221.

PAULY, D. 1980. On the interrelationships between natural mortality, growth parameters, and mean environmental temperature in 175 fish stocks. J. Cons. int. Explor Mer. 39, 175-192.

PIKITCH, E.K., HILBORN, R., MCALLISTER, M.K. and A.E. PUNT. 1993. Stock assessment and decision analysis for the western stock of hoki in 1992. New Zealand Fisheries Assessment Research Document 93/10.

POOLE, D., GIVENS, G.H. and A.E. RAFTERY. 1999. A proposed stock assessment method and its application to bowhead whales, Balaena mysticetus. Fish. Bull., US 97, 144-152.

PRESS, W.H., FLANNERY, B.P. TEUKOLSKY, S.A. and W.T. VETTERLING. 1988. Numerical Recipes: the Art of Scientific Computing. Cambridge: Cambridge University Press.

PUNT, A.E. 1993. The comparative performance of production-model and ad hoc tuned VPA based feedback-control management procedures for the stock of Cape hake off the west coast of South Africa. pp. 283-299. In: Smith, S.J., Hunt, J.J. and D. Rivard. eds. Risk Evaluation and Biological Reference Points for Fisheries Management. Can. Spec. Publ. Fish. Aquat. Sci. 120.

PUNT, A.E. 1995. The performance of a production-model management procedure. Fish. Res. 21, 349-374.

PUNT, A.E. 1997. The performance of VPA-based management. Fish. Res. 29, 217-243.

PUNT, A.E. and D.S. BUTTERWORTH. 1991. On an approach for comparing the implications of alternative fish stock assessments, with application to the stock of Cape hake off northern Namibia. S. Afr. J. mar. Sci. 10, 219-240.

PUNT, A.E. and D.S. BUTTERWORTH. 1993. Variance estimates for fisheries assessment: their importance and how best to evaluate them. pp. 145-162. In: Smith, S.J., Hunt, J.J. and D. Rivard. eds. Risk Evaluation and Biological Reference Points for Fisheries Management. Can. Spec. Publ. Fish. Aquat. Sci. 120.

PUNT, A.E. and D.S. BUTTERWORTH. 1996. Further remarks on the Bayesian approach for assessing the Bering-Chukchi-Beaufort Seas stock of bowhead whales. Rep. int. Whal. Commn 46, 481-491.

PUNT, A.E. and D.S. BUTTERWORTH. 2000. Why do Bayesian and maximum likelihood assessments of the Bering-Chukchi-Beaufort Seas stock of bowhead whales differ? J. Cetacean Res. Manage. 2, 125-133.

PUNT, A.E. and R. HILBORN. 1996. Biomass dynamic models. User's manual. FAO Computerized Information Series (Fisheries). Rome: FAO.

PUNT, A.E. and R. HILBORN. 1997. Fisheries stock assessment and decision analysis: the Bayesian approach. Rev. Fish. Biol. Fish. 7, 35-63.

PUNT, A.E. and R.B. KENNEDY. 1997. Population modelling of Tasmanian rock lobster, Jasus edwardsii, resources. Mar. Freshw. Res. 48, 967-980.

PUNT, A.E. and T.I. WALKER. 1998. Stock assessment and risk analysis for the school shark off southern Australia. Mar. Freshw. Res. 49, 719-731

QUINN, T.J. II, FAGEN, R. and J. ZHENG. 1990. Threshold management polices for exploited populations. Can. J. Fish. Aquat. Sci. 47, 2016-2029.

RAFTERY, A.E. and S.M. LEWIS. 1992. Comment: On long runs with diagnostics: Implementation strategies for Markov Chain Monte Carlo. Statistical Science 7, 493-497.

RAFTERY, A.E., GIVENS, G.H. and J.H. ZEH. 1995. Inference from a deterministic population dynamics model for bowhead whales. J. Am. Statist. Assoc. 90, 402-416.

RAFTERY, A.E, POOLE, D and G.H. GIVENS. 1996. The Bayesian synthesis assessment method: Resolving the Borel paradox and comparing the backwards and forwards variants. IWC Document SC/48/AS16.

RESTREPO, V.R., HOENIG, J.M., POWERS, J.E., BAIRD, J.W. and S.C. TURNER. 1992. A simple simulation approach to risk and cost analysis, with applications to swordfish and cod fisheries. Fishery Bull., US 90, 736-748.

RICE, J.C. and L.J. RICHARDS. 1996. A framework for reducing implementation uncertainty in fisheries management. North Am. J. Fish. Manage. 16, 488-494.

RICHARDS, L.J. 1991. Use of contradictory data sources in stock assessments. Fish. Res. 11, 225-238.

RICKER, W.E. 1954. Stock and recruitment. J. Fish. Res. Bd. Can. 11, 559-623.

ROSENBERG, A.A. and S. BRAULT. 1993. Choosing a management strategy for stock rebuilding when control is uncertain. pp. 243-249. In: Smith, S.J., Hunt, J.J. and D. Rivard. eds. Risk Evaluation and Biological Reference Points for Fisheries Management. Can. Spec. Publ. Fish. Aquat. Sci. 120.

RUBIN, D.B. 1987. Comment: The calculation of posterior distributions by data augmentation. J. Am. Statist. Assoc. 82, 543-546.

RUBIN, D.B. 1988. Using the SIR algorithm to simulate posterior distributions. pp. 385-402. In: Bernardo, J.M., DeGroot, M.H., Lindley, D.V. and A.M. Smith. eds. Bayesian Statistics 3: Proceedings of the Third Valencia International Meeting, 1-5 June 1987. Oxford: Clarendon.

SAINSBURY, K.J. 1988. The ecological basis of multispecies fisheries, and management of a demersal fishery in tropical Australia. pp. 349-382. In: Gulland, J.A. ed. Fish Population Dynamics, 2nd ed. New York: Wiley.

SAINSBURY, K.J., CAMPBELL, R.A., LINDHOLM, R. and W. WHITELAW. 1997. Experimental management of an Australian multispecies fishery: Examining the possibility of trawl-induced habitat modification. pp. 107-112. In: Pikitch, E.K., Huppert, D.D. and M.P. Sissenwine. eds. Global Trends: Fisheries Management. Bethesda: American Fisheries Society Symposium.

SCHAEFER, M.B. 1954. Some aspects of the dynamics of populations important to the management of commercial marine fisheries. Bull. Inter-Am. Trop. Tuna Commn 1, 25-56.

SCHAEFER, M.B. 1957. A study of the dynamics of the fishery for yellowfin tuna in the Eastern tropical Pacific Ocean. Bull. Inter-Am. Trop. Tuna Commn 2, 247-285.

SCHNUTE, J.T. 1985. A general theory for analysis of catch and effort data. Can. J. Fish. Aquat. Sci. 42, 414-429.

SCHNUTE, J.T. and R. HILBORN. 1993. Analysis of contradictory data sources in fish stock assessments. Can. J. Fish. Aquat. Sci. 50, 1916-1923.

SHEPHERD, M.P. and F.C. WITHLER. 1958. Spawning stock size and resultant production for Skeena sockeye. J. Fish. Res. Bd. Can. 15, 1007-1025.

SMITH, A.F.M. 1991. Bayesian computational methods. Trans. R. Soc. Lond A. 337, 369-386.

SMITH, S.J., HUNT, J.J. and D. RIVARD. (eds.) 1993. Risk Evaluation and Biological Reference Points for Fisheries Management. Can. Spec. Publ. Fish. Aquat. Sci. 120.

SMITH, A.D.M. and A.E. PUNT. 1998. Stock assessment of gemfish (Rexea solandri) in eastern Australia using maximum likelihood and Bayesian methods. pp. 245-286. In: Quinn, T.J. II, Funk, F., Heifetz, J., Ianelli, J.N., Powers, J.E., Schweigert, J.F., Sullivan, P.J. and C-I Zhang. eds. Fisheries Stock Assessment Models, Alaska Sea Grant College Program, AK-SG-98-01, University of Alaska Fairbanks.

THOMPSON, G.G. 1992. A Bayesian approach to management advice when stock-recruitment parameters are uncertain. Fish. Bull., US 90, 561-573.

THOMPSON, G.G. 1993. A proposal for a threshold stock size and maximum fishing mortality rate. pp. 303-320. In: Smith, S.J., Hunt, J.J. and D. Rivard. eds. Risk Evaluation and Biological Reference Points for Fisheries Management. Can. Spec. Publ. Fish. Aquat. Sci. 120.

VAN DIJK, H.K., HOP, J.P. and A.S. LOUTER. 1987. An algorithm for the computation of posterior moments and densities using simple importance sampling. The Statistician 36, 83-90.

WALTERS, C.J. and R. HILBORN. 1976. Adaptive control of fishing systems. J. Fish. Res. Board Can. 33, 145-159.

WALTERS, C.[J.] and D. LUDWIG. 1994. Calculation of Bayes posterior probability distributions for key population parameters. Can. J. Fish. Aquat. Sci. 51, 713-722.

WALTERS, C.J. and A.E. PUNT. 1994. Placing odds on sustainable catch using virtual population analysis and survey data. Can. J. Fish. Aquat. Sci. 51, 946-958.


Previous Page Top of Page Next Page