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BAYES-SA - Bayesian stock assessment methods in fisheries - User's manual












Punt, A.E.; Hilborn, R. BAYES-SA: Bayesian stock assessment methods in fisheries. User's manual. FAO Computerized Information Series (Fisheries). No. 12. Rome, FAO. 2001. 56p.


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    Virtual Population Analysis (VPA) is a widely used model for the analysis of fished populations. While there are very many VPA techniques, they vary in the way they use data and fit the model rather than in the form of the model itself. This manual describes the common VPA model and the assumptions on which it is based, together with descriptions of associated diagnostic procedures and common reference points. More importantly, the manual describes the numerical techniques which can be used to f it the model based on weighted least-squares, which is the basis for the ADAPT approach. The techniques are described so that they are readily implemented in a spreadsheet. General methods and specific examples are given to enable the readers to develop an approach suitable for their own data and fisheries.
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    Status of Interactions of Pacific Tuna Fisheries in 1995
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    1996
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    This publication includes forty papers and two abstracts of papers presented at the Second FAO Expert Consultation on Pacific Tuna Fisheries held in Shimizu, Japan, from 23 to 31 January 1995. The topics of the papers include: · reviews of tuna fisheries interactions and their research including methods for their study, · new methods for studying tuna fisheries interactions and examination of their applicability, · case studies on tuna fisheries interactions, · analyses of tuna fisheri es involved in interactions and their management, and · an overview of FAO’s project that co-organized and co-sponsored the Consultation. A supplement of an indexed bibliography of papers on tuna and billfish tagging, which was printed separately, is also included. The objectives of the Consultation were to: · review and integrate the outcome of the studies on tuna fisheries interactions, · summarize the extent of tuna fisheries interactions and unresolved research problems, and · fo rmulate guidelines for research on tuna fisheries interactions. The understanding of tuna fisheries interactions was enhanced significantly by recent studies. However, the Consultation noted that the number of quantified interactions is still small due primarily to difficulties associated with evaluating such interactions. The papers providing supporting information for the conclusions of the Consultation are presented in this publication. Interactions were found to vary in significance depend ing on the biological characteristics of the species involved, the sizes of fish caught, the local and stock-wide rates of exploitation, and the distance among fisheries. In many of the studies presented, the inadequacy of fisheries data was stressed. In addition, the lack of understanding of movements of the fish being studied was noted in several papers. General qualitative guidelines presented in several discussion papers stressed that specifically-designed studies be undertaken to adequately quantify interactions. Well-designed tagging experiments were thought to provide the most reliable information about interactions. Guidelines for the collection of data, biological and ecosystem research, modelling, and alternative methodologies for studying tuna fisheries interactions are also included.
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    FAO-ICLARM Stock Assessment Tools II (FiSAT II). Revised version. User's guide. (Includes a CD-ROM with the software) 2005
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    The revised version of FiSAT (FiSAT II) is a program package consisting of methodologies for use with computers, enabling users to formulate some management options for fisheries, especially in data-sparse, tropical contexts. The FiSAT II was developed for computers running on Microsoft Windows® operating system. The new version utilizes the standard Windows graphic user interface. FiSAT II was developed mainly for the analysis of length-frequency data, but also enables related analy ses, of size-at-age, catch-at-age, selection and other data typically collected for tropical fish stock assessment.

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